Workflow: binning.cwl
Fetched 2024-04-26 11:47:05 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| reads | File[] | ||
| contigs | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bin_refinement |
../tools/metawrap_bin_refinement.cwl
(CommandLineTool)
|
metaWrap bin refinement |
https://arxiv.org/abs/1604.03071 http://cab.spbu.ru/files/release3.12.0/manual.html#meta |
| metawrap_binning |
../tools/metawrap_binning.cwl
(CommandLineTool)
|
metaWrap binning tool |
https://arxiv.org/abs/1604.03071 http://cab.spbu.ru/files/release3.12.0/manual.html#meta |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| refined_bins | File[] | ||
| raw_concoct_bins | Directory (Optional) | ||
| raw_maxbin2_bins | Directory (Optional) | ||
| raw_metabat2_bins | Directory (Optional) |
Permalink:
https://w3id.org/cwl/view/git/458c3a473734765a1a7009434d72e69a9773b189/workflows/binning.cwl
