Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph kmer_top_n_extract

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_top_n_extract.cwl

Branch/Commit ID: 3384fa5776c183d33bef830696b6edc6ec55a292
workflow graph Unaligned bam to sorted, markduped bam

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align_sort_markdup.cwl

Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
workflow graph 02-trim-pe.cwl

RNA-seq 02 trimming - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
workflow graph 02-trim-se.cwl

ChIP-seq 02 trimming - reads: SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl

Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854
workflow graph schemadef-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/schemadef-wf.cwl

Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4
workflow graph pipeline.cwl

https://github.com/EBI-Metagenomics/CWL-assembly.git

Path: tools/pipeline.cwl

Branch/Commit ID: dd2f03cc8a0ca7bc644968ac0c34d4502d6da093
workflow graph kf_jointgenotyping_workflow_optimized.cwl

https://github.com/kids-first/kf-jointgenotyping-workflow.git

Path: workflow/kf_jointgenotyping_workflow_optimized.cwl

Branch/Commit ID: 9c5671e49e5e47cbe872c7b873c5e479c6aaf973
workflow graph grep-and-count.cwl

https://github.com/manabuishii/cwl-samples.git

Path: grep-and-count.cwl

Branch/Commit ID: bff3770d52404b12d2d0f12b45c4c0edd3213dba
workflow graph Filter Protein Seeds; Find ProSplign Alignments

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_compart_filter_prosplign.cwl

Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
workflow graph gatk4W.cwl

Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/ambarishK/bio-cwl-tools.git

Path: gatk4W.cwl

Branch/Commit ID: 530e671c113e91fe6b9114eda32103bb980450c7