Workflow: Filter Protein Seeds; Find ProSplign Alignments
Fetched 2023-01-11 12:47:52 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/7c8eb4d23c3c9859f57421643710c0b6d57b606c/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| asn_cache | Directory | ||
| seed_hits | File | ||
| gc_assembly | File | ||
| uniColl_asn_cache | Directory |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| Find_ProSplign_Alignments_gpx_qdump |
gpx_qdump_pro.cwl
(CommandLineTool)
|
Find ProSplign Alignments, gather | |
| Find_ProSplign_Alignments_gpx_qsubmit |
gpx_qsubmit_pro.cwl
(CommandLineTool)
|
Find ProSplign Alignments, scatter | |
| Filter_Protein_Seeds_prosplign_compart |
prosplign_compart.cwl
(CommandLineTool)
|
Filter Protein Seeds, compart | |
| Find_ProSplign_Alignments_prosplign_wnode |
prosplign_wnode.cwl
(CommandLineTool)
|
Seed Search Compartments, execute\" | |
| Filter_Protein_Seeds_prosplign_compart_filter |
prosplign_compart_filter.cwl
(CommandLineTool)
|
Filter Protein Seeds, compart filter |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| prosplign_align | File |
Permalink:
https://w3id.org/cwl/view/git/7c8eb4d23c3c9859f57421643710c0b6d57b606c/protein_alignment/wf_compart_filter_prosplign.cwl
