Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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lobSTR-workflow.cwl
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https://github.com/common-workflow-language/cwlviewer.git
Path: src/test/resources/cwl/lobstr-v1/lobSTR-workflow.cwl Branch/Commit ID: 244afa5f14a285c82e3732001526446b8a189948 |
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STAR-Alignment-PE
This workflow aligns the fastq files using STAR for paired-end samples |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment.cwl Branch/Commit ID: f37e1346f1d48fe9f2b9282e37997a2e3ffed7e2 |
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gather-metrics-sample.cwl
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/modules/sample/gather-metrics-sample.cwl Branch/Commit ID: 8766def7f70f329e2a4c56239f141685a873599b |
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Create tagAlign file
This workflow creates tagAlign file |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/create-tagAlign.cwl Branch/Commit ID: 3b9736a19eed3efc8f6cc587df282aad4f50a2ee |
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Merge, annotate, and generate a TSV for SVs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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Apply filters to VCF file
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https://github.com/genome/cancer-genomics-workflow.git
Path: detect_variants/filter_vcf.cwl Branch/Commit ID: 3e84098f77686523fe3dbb807b35450b56501c59 |
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analysis for assembled sequences
rna / protein - qc, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/assembled.workflow.cwl Branch/Commit ID: 9aba38fd1569287b7256ace7163ac84320909f8a |
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03-map-se.cwl
ChIP-seq 03 mapping - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/03-map-se.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3 |
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ani_top_n
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https://github.com/ncbi/pgap.git
Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 3384fa5776c183d33bef830696b6edc6ec55a292 |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/2blat/workflow.cwl Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d |
