Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580 |
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etl_http.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/etl_http.cwl Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de |
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protein_extract
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https://github.com/ncbi/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
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integrity.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/integrity.cwl Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de |
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wf_demultiplex_pe.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_demultiplex_pe.cwl Branch/Commit ID: 01c40305cd0adf60b245ba4c59d6607585ae6199 |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f |
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preprocess fasta
Remove reads from fasta files based on sequence stats. Return fasta files with reads passed and reads removed. |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/preprocess-fasta.workflow.cwl Branch/Commit ID: 81feefc84ec0faecf1ade718001d5f07610e616e |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f |
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fastqtosam_pe.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/fastqtosam/fastqtosam_pe.cwl Branch/Commit ID: 51d4f5c34d2cc0ed535e2382c4e458aeefd308de |
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sum-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/sum-wf.cwl Branch/Commit ID: f089144b32606d7eac37fa2effbec2147ef71236 |
