Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5
	MoveData-workflow.cwl	https://github.com/nal-i5k/organism_onboarding.git Path: MoveData-workflow.cwl Branch/Commit ID: cbcba0db7174398aa6a009ef2a63a93f8fa6bf52
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
	split_bam_subpipeline.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/split_bam_subpipeline.cwl Branch/Commit ID: db347697cbf46ed1d160d50666943bd56a2646f4
	assm_assm_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 47ccbd0bc7b45bf8b3c92d0a66c1a9a232367a5d
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: eb0092603bf57acb7bda08a06e4f2f1e2a8c9b6d
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec
	gathered exome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_gathered.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec