Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Filter single sample sv vcf from paired read callers(Manta/Smoove)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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step-valuefrom4-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/step-valuefrom4-wf.cwl Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b |
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phase VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd |
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bam to trimmed fastqs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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kf_jointgenotyping_workflow_optimized.cwl
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https://github.com/kids-first/kf-jointgenotyping-workflow.git
Path: workflow/kf_jointgenotyping_workflow_optimized.cwl Branch/Commit ID: 58fc7a3c09dc37e38c89ae1621f49c79403a9f56 |
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Unaligned BAM to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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umi per-lane alignment subworkflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: cfdcd0735e8fb1ac0b97f1a5cbe0cc7e00033dd0 |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
