Workflow: module-5
Fetched 2023-01-12 17:44:27 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bams | File[] | ||
| genome | String | ||
| clstats1 | 1f6fde46a96e9689857a3e6b0ba34f36[] | ||
| clstats2 | 69dbc8fb6ab659ef76eea327ea2ca277[] | ||
| fp_genotypes | File | ||
| fp_intervals | File | ||
| pairing_file | File | ||
| request_file | File | ||
| grouping_file | File | ||
| bait_intervals | File | ||
| project_prefix | String | ||
| md_metrics_files | 8c8cc7a42a51f19ca5fdf4df1efe2e62[] | ||
| target_intervals | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| generate_pdf |
cmo-qcpdf/0.5.11/cmo-qcpdf.cwl
(CommandLineTool)
|
cmo-qcpdf |
None |
| scatter_metrics |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| qc_files | File[] | ||
| qual_pdf | File[] | ||
| as_metrics | File[] | ||
| gcbias_pdf | File[] | ||
| hs_metrics | File[] | ||
| insert_pdf | File[] | ||
| qual_metrics | File[] | ||
| doc_basecounts | File[] | ||
| gcbias_metrics | File[] | ||
| gcbias_summary | File[] | ||
| insert_metrics | File[] | ||
| per_target_coverage | File[] |
Permalink:
https://w3id.org/cwl/view/git/4e0f50f76ff0dfc9c5d9b4a92e4f4ba0fdc9f402/setup/cwl/module-5.cwl
