Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph First scatter to find seed orthologs, unite them, find annotations

https://github.com/kinow/pipeline-v5.git

Path: workflows/subworkflows/assembly/eggnog-subwf.cwl

Branch/Commit ID: eosc-life-gos
workflow graph call_variants.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/subworkflows/call_variants.cwl

Branch/Commit ID: master
workflow graph step5: The process of updating the GFF format file from identifying TSS (transcription start sites) from CAGE-seq data

\" The process of updating the GFF format file from identifying TSS - transcription start sites - from paired-end CAGE-seq data. This workflow consists of the following files: (1) Tools/06_combined_exec_TSSr.cwl, (2) Tools/07_join_all_assignedClusters.cwl, (3) Tools/08_uniq_tss_feature.cwl, (4) Tools/09_update_gtf.cwl \"

https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git

Path: workflow/04_tssr_subworkflow_pe.cwl

Branch/Commit ID: main
workflow graph fastq_foreign_chromosome_cleanup

This workflow remove foreign chromosome comtamination from blastn TSV files

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/fastq-foreign-chromosome-cleanup.cwl

Branch/Commit ID: master
workflow graph workflow_localfiles.cwl

https://github.com/inab/Wetlab2Variations.git

Path: cwl-workflows/demonstrator/workflow_localfiles.cwl

Branch/Commit ID: master
workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-fastq.workflow.cwl

Branch/Commit ID: master
workflow graph starfishRunner.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/starfishRunner.cwl

Branch/Commit ID: master
workflow graph bqsr-flow.cwl

Run BQSR pre+post+plot flow

 https://github.com/sentieon/sentieon-cwl.git

Path: stage/bqsr-flow.cwl

Branch/Commit ID: master
workflow graph gvcf-distr.cwl

https://github.com/sentieon/sentieon-cwl.git

Path: stage/gvcf-distr.cwl

Branch/Commit ID: master
workflow graph checkm_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_checkm_wnode.cwl

Branch/Commit ID: master