Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: 69da10a
workflow graph kb-tss-preprocess-all.cwl#align-texts-wf.cwl

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/kb-tss-preprocess-all.cwl

Branch/Commit ID: master

Packed ID: align-texts-wf.cwl
workflow graph env-wf1.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/env-wf1.cwl

Branch/Commit ID: master
workflow graph hello_world.cwl

https://github.com/dockstore/hello_world.git

Path: hello_world.cwl

Branch/Commit ID: v1.0.0
workflow graph dedup-3-pass-distr.cwl

run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially in distributed mode

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/dedup-3-pass-distr.cwl

Branch/Commit ID: master
workflow graph count-lines11-wf-noET.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines11-wf-noET.cwl

Branch/Commit ID: main
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: preprocess_vcf.cwl

Branch/Commit ID: master
workflow graph rRNA_selection.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 71d9c83
workflow graph ValidateCameraChargeResponse

Validate camera charge response.

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateCameraChargeResponse.cwl

Branch/Commit ID: main
workflow graph bams2gvcf.woBQSR_male.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR_male.cwl

Branch/Commit ID: master