Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph alignment workflow

https://github.com/griffithlab/pmbio.org.git

Path: assets/CWL/workflow.cwl

Branch/Commit ID: master
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: dev
workflow graph downsample unaligned BAM and align

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/downsampled_alignment.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl

Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/mr-c/2020-covid-19-bh-viz.git

Path: Ambarish_Kumar_SOP/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl

Branch/Commit ID: main
workflow graph clipAteam.cwl

https://github.com/lonbar/VLBI-cwl.git

Path: workflows/clipAteam.cwl

Branch/Commit ID: master
workflow graph TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

https://github.com/stain/workflow-is-cwl.git

Path: workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: avoid-spaces
workflow graph facets.cwl

https://github.com/mskcc/roslin-cwl.git

Path: modules/pair/facets.cwl

Branch/Commit ID: master
workflow graph step2: trimming fastq files (paired-end)

multiple fastq files trimming process using fastp version 0.23.4 and scatter feature requirement

 https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git

Path: workflow/01_trimming_fastq_subworkflow_pe.cwl

Branch/Commit ID: main
workflow graph step3: create STAR index

create STAR index for mapping CAGE-Seq data (step 1: decompress reference genome fasta file, step 2: create STAR index)

 https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git

Path: workflow/02_star_index_subworkflow.cwl

Branch/Commit ID: main
workflow graph step4: STAR for CAGE-Seq reads analysis

STAR for CAGE-Seq reads analysis

 https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git

Path: workflow/03_star4cageseq_analysis_subworkflow_pe.cwl

Branch/Commit ID: main