Workflow: qa_check_subwf.cwl
Fetched 2024-04-26 12:11:11 GMT
Verified with cwltool version 3.1.20221201130942
This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| vcfs | File[] | ||
| normal_bam | File | ||
| tumour_bam | File | ||
| tumour_record | https://w3id.org/cwl/view/git/b38a8a4785746b8267913ea5389e21ae6dc921a3/TumourType.yaml#TumourType | ||
| normal_minibam | File | ||
| tumour_minibam | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| check_files |
qa_check_subwf.cwl#check_files/c54438fe-0923-4759-b2ef-d0b9be9862c3
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| qa_result | File |
Permalink:
https://w3id.org/cwl/view/git/b38a8a4785746b8267913ea5389e21ae6dc921a3/qa_check_subwf.cwl
