Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 7b5130d2408bce82ee15c666b37d931ef6f452e3
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: be5ae41801b19ebc69a2889d8fdb39e8e2359611
	pass-unconnected.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/pass-unconnected.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca
	downsample unaligned BAM and align	https://github.com/genome/cancer-genomics-workflow.git Path: unaligned_bam_to_bqsr/downsample_workflow.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 7cee09fb3e33c851e4e1dfc965c558b82290a785
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470
	tt_fscr_calls_pass1	https://github.com/ncbi/pgap.git Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 3897218b16b30a933beecd60a98a300d677207d8