Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
chksum_for_corrupted_files.cwl
|
Path: cwls/chksum_for_corrupted_files.cwl Branch/Commit ID: 0.5.0_test |
|
|
|
clean_reads_qc.cwl
|
Path: python/lib/MICGENT/data/cwl/clean_reads_qc.cwl Branch/Commit ID: master |
|
|
|
somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: master |
|
|
|
Detect DoCM variants
|
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: master |
|
|
|
gathered exome alignment and somatic variant detection
|
Path: definitions/pipelines/somatic_exome_gathered.cwl Branch/Commit ID: low-vaf |
|
|
|
kallisto_wf_pe.cwl
|
Path: workflows/kallisto/paired_end/kallisto_wf_pe.cwl Branch/Commit ID: master |
|
|
|
PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
Path: pgap.cwl Branch/Commit ID: master |
|
|
|
oxog_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
Path: oxog_sub_wf.cwl Branch/Commit ID: master |
|
|
|
wf-svcall.cwl
|
Path: wes-agha-test/wes_chr21_test-workflow-gcp/wf-svcall.cwl Branch/Commit ID: master |
|
|
|
genome-kallisto-index.cwl
Generates a FASTA file with the DNA sequences for all transcripts in a GFF file and builds kallisto index |
Path: tools/genome-kallisto-index.cwl Branch/Commit ID: master |
