Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl Branch/Commit ID: master |
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count-lines11-extra-step-wf-noET.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines11-extra-step-wf-noET.cwl Branch/Commit ID: master |
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WF5201.cwl
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https://github.com/Marco-Salvi/dtc51.git
Path: WF5201.cwl Branch/Commit ID: main |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: c1f8b22 |
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count-lines11-extra-step-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines11-extra-step-wf-noET.cwl Branch/Commit ID: master |
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NonSpliced RNAseq workflow
Workflow for NonSpliced RNAseq data alignment with multiple aligners. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (trimming) - bowtie2 (read mapping) - sam_to_sorted-bam - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_NonSpliced.cwl Branch/Commit ID: master |
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exome alignment and germline variant detection
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https://github.com/litd/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: master |
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running cellranger mkfastq and count
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 26806d99f8e2a241715fd081e712d4e3763db5b8 |
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chksum_xam_to_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_xam_to_interleaved_fq.cwl Branch/Commit ID: 0.4.1 |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: test |
