Workflow: oxog_sub_wf.cwl
Fetched 2025-10-27 18:03:08 GMT
Verified with cwltool version 3.1.20221201130942
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| in_data | https://w3id.org/cwl/view/git/b38a8a4785746b8267913ea5389e21ae6dc921a3/TumourType.yaml#TumourType | ||
| refDataDir | Directory | ||
| vcfsForOxoG | File[] | ||
| inputFileDirectory | Directory |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| sub_run_oxog |
oxog.cwl
(CommandLineTool)
|
This tool will run OxoG. The OxoG tool was written by Dimitri Livitz. This CWL wrapper was written by Solomon Shorser. |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| oxogVCF | File[] |
Permalink:
https://w3id.org/cwl/view/git/b38a8a4785746b8267913ea5389e21ae6dc921a3/oxog_sub_wf.cwl
