Workflow: oxog_sub_wf.cwl

Fetched 2024-02-28 22:56:39 GMT

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

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Inputs

ID Type Title Doc
in_data https://w3id.org/cwl/view/git/b38a8a4785746b8267913ea5389e21ae6dc921a3/TumourType.yaml#TumourType
refDataDir Directory
vcfsForOxoG File[]
inputFileDirectory Directory

Steps

ID Runs Label Doc
sub_run_oxog
oxog.cwl (CommandLineTool)

This tool will run OxoG. The OxoG tool was written by Dimitri Livitz. This CWL wrapper was written by Solomon Shorser.

Outputs

ID Type Label Doc
oxogVCF File[]
Permalink: https://w3id.org/cwl/view/git/b38a8a4785746b8267913ea5389e21ae6dc921a3/oxog_sub_wf.cwl