Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Per-region pindel
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: ffd73951157c61c1581d346628d75b61cdd04141 |
|
|
|
Add snv and indel bam-readcount files to a vcf
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: dc2c019c1aa24cc01b451a0f048cf94a35f163c4 |
|
|
|
Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: f42c889734c8f709ad2fd9090493bcaac8326c98 |
|
|
|
exome alignment with qc
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment.cwl Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c |
|
|
|
Merge, annotate, and generate a TSV for SVs
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: f42c889734c8f709ad2fd9090493bcaac8326c98 |
|
|
|
Detect DoCM variants
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: e56f1024306aeb427d8aae2fff715ed2e8b8f86f |
|
|
|
Subworkflow that runs cnvkit in single sample mode and returns a vcf file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: f42c889734c8f709ad2fd9090493bcaac8326c98 |
|
|
|
bgzip and index VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59 |
|
|
|
Bisulfite QC tools
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 40097e1ed094c5b42b68f3db2ff2cbe78c182479 |
|
|
|
Detect Variants workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c |
