Workflow: spurious_annot
Fetched 2023-01-14 09:29:32 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/d1dbdb71edf26840e0dceea60396bbfc65f56508/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| AntiFamLib | Directory | ||
| sequence_cache | Directory | ||
| scatter_gather_nchunks | String | ||
| Extract_ORF_Proteins_lds2 | File | ||
| Extract_ORF_Proteins_seqids | File | ||
| Extract_ORF_Proteins_proteins | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| Search_AntiFam_I |
../task_types/tt_hmmsearch_wnode.cwl
(Workflow)
|
||
| AntiFam_tainted_proteins_I |
../progs/reduce.cwl
(CommandLineTool)
|
reduce |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| AntiFam_tainted_proteins_I___oseqids | File |
Permalink:
https://w3id.org/cwl/view/git/d1dbdb71edf26840e0dceea60396bbfc65f56508/spurious_annot/wf_spurious_annot_pass1.cwl
