Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph LSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/LSU-from-tablehits.cwl

Branch/Commit ID: 5dc7c5c
workflow graph rMATS_bam_packed.cwl

https://github.com/Xinglab/rmats-turbo.git

Path: cwl/rMATS_bam_packed.cwl

Branch/Commit ID: master
workflow graph bacterial_orthology

https://github.com/ncbi/pgap.git

Path: bacterial_orthology/wf_bacterial_orthology.cwl

Branch/Commit ID: master
workflow graph sc_atac_seq_initial_analysis.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/sc_atac_seq_initial_analysis.cwl

Branch/Commit ID: 06aeffe
workflow graph exome alignment and tumor-only variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/tumor_only_exome.cwl

Branch/Commit ID: downsample_and_recall
workflow graph blastp_wnode_struct

https://github.com/ncbi/pgap.git

Path: task_types/tt_blastp_wnode_struct.cwl

Branch/Commit ID: master
workflow graph canine_mutect2_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_mutect2_module.cwl

Branch/Commit ID: master
workflow graph QIIME2 Step 2 (DADA2 option)

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: main
workflow graph access_qc.cwl

https://github.com/msk-access/qc_generation.git

Path: access_qc.cwl

Branch/Commit ID: develop
workflow graph combine_counts.cwl

Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file.

https://github.com/reddylab/bird-workflow.git

Path: 02_combine_counts/combine_counts.cwl

Branch/Commit ID: main