Explore Workflows
View already parsed workflows here or click here to add your own
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: develop |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 43d2fb8 |
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count-lines2-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines2-wf.cwl Branch/Commit ID: master |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 9c57dba |
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bulk_analysis.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/bulk_analysis.cwl Branch/Commit ID: develop |
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cond-with-defaults.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-with-defaults.cwl Branch/Commit ID: main |
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gk-run-siesta-snapshot.cwl
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https://github.com/vdikan/cwl-gk-thermal.git
Path: cwl/gk-run-siesta-snapshot.cwl Branch/Commit ID: master |
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fail-unconnected.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/fail-unconnected.cwl Branch/Commit ID: master |
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word-mapping-test-files-wf.cwl#word-mapping-wf.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/word-mapping-test-files-wf.cwl Branch/Commit ID: master Packed ID: word-mapping-wf.cwl |
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QIIME2 Step 1
QIIME2 Import and Demux Step 1 |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step1-import-demux.cwl Branch/Commit ID: qiime2-workflow Packed ID: main |
