Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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scatter-valuefrom-inputs-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-valuefrom-inputs-wf1.cwl Branch/Commit ID: main |
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myWorkflow2.cwl
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https://github.com/pascmont/cwltest.git
Path: myWorkflow2.cwl Branch/Commit ID: main |
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count-lines6-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines6-wf.cwl Branch/Commit ID: main |
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Alignment without BQSR
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_to_bqsr_nonhuman.cwl Branch/Commit ID: low-vaf |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/Barski-lab/workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: master |
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strelka workflow
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: strelka/workflow.cwl Branch/Commit ID: master |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: main |
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hi-c-processing-pairs.cwl
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https://github.com/mr-c/4dn-dcic-pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-pairs.cwl Branch/Commit ID: dev2 |
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Transcripts annotation workflow
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-wf.cwl Branch/Commit ID: master |
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simple_two_step.cwl
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https://github.com/NCBI-Hackathons/BLAST-Pipelines-and-FAIR.git
Path: blast-pipelines/simple_two_step.cwl Branch/Commit ID: master |
