Workflow: QIIME2 Step 1
Fetched 2025-11-04 02:07:38 GMT
Verified with cwltool version 3.1.20221201130942
QIIME2 Import and Demux Step 1
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| barcodes | File |
barcodes associated with sequences in FASTQ format |
|
| sequences | File |
single ended sequence reads in FASTQ format |
|
| sample_metadata | File |
Sample metadata in tsv format |
|
| metadata_barcodes_column | String |
name of the column in sample_metadata that contains barcodes |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| demux | qiime2 demux sequences |
Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
|
| import_data | qiime2 importing data |
Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| sequences_artifact | File | ||
| demux_sequences_artifact | File | ||
| demux_visualization_artifact | File |
Permalink:
https://w3id.org/cwl/view/git/68c92437c854a200433ee684067f81f13de5d8eb/packed/qiime2-step1-import-demux.cwl?part=main
