Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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vg_basic_workflow.cwl
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https://github.com/jeizenga/cwl-intro-gui-workshop.git
Path: 2018_matsue_biohackathon/vg_basic_workflow.cwl Branch/Commit ID: master |
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pipeline.cwl
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https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git
Path: pipeline.cwl Branch/Commit ID: master |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 5e82174 |
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record-in-secondaryFiles-missing-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/record-in-secondaryFiles-missing-wf.cwl Branch/Commit ID: master |
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qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-05-phylogeny.cwl |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 1.0.5 |
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assm_assm_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 0d0ba0c3410e8aee55c82f077cee31d8ee929b5a |
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FragPipe: TMT Integrator and QC
This workflow step executes TMT-Integrator using the report tables generated by Philosopher. The program applies a series of statistical filters, and high-quality thresholds to filter the data. Summary report tables are created containing peptides, proteins, genes, and phosphosites (only for phospho-enriched data sets). |
https://github.com/cwl-apps/fragpipe-proteomics-pipeline-tutorial.git
Path: FragPipe-TMT-Integrator-and-QC/fragpipe-tmt-integrator-and-qc.cwl Branch/Commit ID: main |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: d71be68 |
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basic.cwl
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https://github.com/ljdursi/cwl-tutorial.git
Path: cl-tools/workflow/basic.cwl Branch/Commit ID: master |
