Explore Workflows

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Graph Name Retrieved From View
workflow graph contig construction and protein prediction

\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/01_megahit.cwl ./Tools/02_rename.cwl ./Tools/03_seqkit_stats.cwl ./Tools/04_prodigal.cwl\"

https://github.com/RyoMameda/ComplexMicrobiome_GeneExpression_CWL.git

Path: Workflow/megahit_prodigal_sw.cwl

Branch/Commit ID: main
workflow graph rhapsody_pipeline_2.0.cwl#VDJ_GatherCalls.cwl

VDJ_GatherCalls collect the outputs from the multi-processed VDJ step into one file.

https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: main

Packed ID: VDJ_GatherCalls.cwl
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/hra-workflows.git

Path: pipeline.cwl

Branch/Commit ID: main
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 3f85843
workflow graph CroMaSt.cwl

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: CroMaSt.cwl

Branch/Commit ID: main
workflow graph validate_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/validate_interleaved_fq.cwl

Branch/Commit ID: 0.2.3
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop
workflow graph oxog_varbam_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: develop
workflow graph metaphlan_wfl.cwl

https://github.com/stevetsa/Metaphlan-SBCGC.git

Path: metaphlan_wfl.cwl

Branch/Commit ID: master
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: 71d9c83