- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Inputs
ID | Type | Title | Doc |
---|---|---|---|
table_hits | File | output of infernal's cmsearch |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
grep |
pull-LSUs.cwl
(CommandLineTool)
|
||
extract_lsu_coords |
extract-coords-from-cmsearch.cwl
(CommandLineTool)
|
The awk script takes the output of Infernal's cmsearch so-called fmt=1 mode
and makes it suitable for use by esl-sfetch, a sequence selector |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
LSU_coordinates | File |
https://w3id.org/cwl/view/git/7bb76f33bf40b5cd2604001cac46f967a209c47f/tools/LSU-from-tablehits.cwl