Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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01-qc-se.cwl
RNA-seq 01 QC - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl Branch/Commit ID: master |
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germline-gpu.cwl
|
https://github.com/mr-c/WGSpipeline.git
Path: Workflows/germline-gpu.cwl Branch/Commit ID: cuda_fixes |
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echo-wc_inline.cwl
Counts words of a message via echo and wc |
https://github.com/NLeSC/scriptcwl.git
Path: tests/data/workflows/echo-wc_inline.cwl Branch/Commit ID: master |
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waltz-workflow.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/waltz/waltz-workflow.cwl Branch/Commit ID: 0.0.33_dmp |
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CRAM_md5sum_checker_wrapper.cwl
This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/DataBiosphere/topmed-workflows.git
Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl Branch/Commit ID: 1.24.0 |
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pipeline-se-blacklist-removal.cwl
ATAC-seq pipeline - reads: SE - with blacklist removal |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl Branch/Commit ID: master |
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count-lines3-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines3-wf.cwl Branch/Commit ID: main |
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process VCF workflow
|
https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/strelka_process_vcf.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
|
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: ca6ca613 |
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Bisulfite alignment and QC
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: master |