- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
bed_file | File | ||
gene_list | File | ||
input_bam | File | ||
run_tools | |||
reference_fasta | String | ||
coverage_threshold | Integer | ||
min_mapping_quality | Integer | ||
reference_fasta_fai | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
count_reads |
../../cwl_tools/waltz/CountReads.cwl
(CommandLineTool)
|
None |
|
pileup_metrics |
../../cwl_tools/waltz/PileupMetrics.cwl
(CommandLineTool)
|
||
grouped_waltz_files |
../../cwl_tools/expression_tools/group_waltz_files.cwl
(ExpressionTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
pileup | File | ||
waltz_output_files | File[] |
Permalink:
https://w3id.org/cwl/view/git/f874bd8a9bb7da9839f0aa6be708d5d16f72945d/workflows/waltz/waltz-workflow.cwl