Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph tRNA_selection.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: f993cad
workflow graph rna amplicon analysis for fasta files

RNAs - qc, preprocess, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/amplicon-fasta.workflow.cwl

Branch/Commit ID: master
workflow graph bulk scRNA-seq pipeline using Salmon

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: bulk-pipeline.cwl

Branch/Commit ID: 536d6ed
workflow graph Conversion and compression of RDF files

Workflow to convert a RDF file to the HDT format and GZIP compress it for long term storage

 https://git.wageningenur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_toHDT_compression.cwl

Branch/Commit ID: master
workflow graph echo-workflow.cwl

https://github.com/BiodataAnalysisGroup/intro-to-cwl-docker.git

Path: _includes/cwl/echo-workflow.cwl

Branch/Commit ID: gh-pages
workflow graph cmsearch-multimodel.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: fa86fce
workflow graph final_filtering

Final filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/final_filtering.cwl

Branch/Commit ID: 3bb03c9b
workflow graph bam_filtering

BAM filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/bam_filtering.cwl

Branch/Commit ID: master
workflow graph wgs alignment with qc

https://github.com/genome/cancer-genomics-workflow.git

Path: wgs_alignment.cwl

Branch/Commit ID: toil_compatibility
workflow graph 01-qc-se.cwl

ChIP-seq 01 QC - reads: SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/01-qc-se.cwl

Branch/Commit ID: master