Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: 135976d
workflow graph ST520110.cwl

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520110.cwl

Branch/Commit ID: main
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: low-vaf
workflow graph count-lines11-wf-noET.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines11-wf-noET.cwl

Branch/Commit ID: master
workflow graph bwa_index

Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_index.cwl

Branch/Commit ID: 1.1.3
workflow graph workflow.cwl

https://gitlab.ebrains.eu/sofiakar/yre-standardised-workflows.git

Path: Workflows/PSD_workflow_smr_2/workflow.cwl

Branch/Commit ID: poster
workflow graph Exome QC workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: qc/workflow_exome.cwl

Branch/Commit ID: toil_compatibility
workflow graph dedup-2-pass-distr.cwl

run 2-pass dedup: algo LocusCollector + algo Dedup sequentially in distributed mode

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/dedup-2-pass-distr.cwl

Branch/Commit ID: master
workflow graph workflow.cwl

https://github.com/lukasheinrich/cwltests.git

Path: cwl/workflow.cwl

Branch/Commit ID: master
workflow graph cnv_codex

CNV CODEX calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_codex.cwl

Branch/Commit ID: master