Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: 0cf06f1 |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: fa86fce |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: 5dc7c5c |
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Apply filters to VCF file
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: low-vaf |
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indexing_bed
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl Branch/Commit ID: 1.0.6 |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open reference otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/OPENrefcluster2plot.cwl Branch/Commit ID: master |
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vecscreen_and_filter_workflow.cwl
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https://github.com/sapojnik/av_screen_x.git
Path: progs/vecscreen_and_filter_workflow.cwl Branch/Commit ID: main |
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workflow.cwl
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https://github.com/52North/testbed16-jupyter-notebooks.git
Path: workflow_water_masks/workflow.cwl Branch/Commit ID: docker-native |
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QIIME2 Step 3
QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: main |
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wf_run_use_case.cwl
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https://github.com/BAMresearch/NFDI4IngScientificWorkflowRequirements.git
Path: simple_use_case/cwl/wf_run_use_case.cwl Branch/Commit ID: feature/latex-prep-job |
