Explore Workflows
View already parsed workflows here or click here to add your own
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qc_workflow.cwl
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Path: workflows/QC/qc_workflow.cwl Branch/Commit ID: master |
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chksum_for_corrupted_fastq_files.cwl
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Path: cwls/chksum_for_corrupted_fastq_files.cwl Branch/Commit ID: 0.5.0 |
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wgs alignment and germline variant detection
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Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: downsample_and_recall |
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magicblast-alignment-pe
This workflow aligns the fastq files using magicblast for paired-end samples |
Path: workflows/Alignments/magicblast-alignment.cwl Branch/Commit ID: master |
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CNV_pipeline
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Path: structuralvariants/cwl/abstract_workflow/abstract_workflow.cwl Branch/Commit ID: master |
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Unaligned to aligned BAM
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Path: unaligned_bam_to_bqsr/align.cwl Branch/Commit ID: toil_compatibility |
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GATK4_SomaticVariantCaller_4_1_3_0.cwl
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Path: janis_pipelines/wgs_somatic/cwl/tools/GATK4_SomaticVariantCaller_4_1_3_0.cwl Branch/Commit ID: master |
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oxog_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
Path: oxog_sub_wf.cwl Branch/Commit ID: develop |
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MACE ChIP-exo peak caller workflow for single-end samples
This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE |
Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl Branch/Commit ID: master |
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chip-seq-alignment-bowtie.cwl
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Path: workflows/ChIP-Seq/chip-seq-alignment-bowtie.cwl Branch/Commit ID: master |
