Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Trim and reformat reads (single and paired end version)
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/amplicon/trim_and_reformat_reads.cwl Branch/Commit ID: master |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: 1.0.5 |
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inp_update_wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/inp_update_wf.cwl Branch/Commit ID: master |
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wf_rescue_ratio_1input.cwl
Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks. |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_rescue_ratio_1input.cwl Branch/Commit ID: master |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 8af5a1c |
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count-lines8-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines8-wf-noET.cwl Branch/Commit ID: main |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 0746e12 |
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chksum_seqval_wf_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.4.0 |
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05-quantification.cwl
ChIP-seq - Quantification - samples: treatment |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl Branch/Commit ID: master |
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bams2gvcf.woBQSR.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR.cwl Branch/Commit ID: master |
