Explore Workflows

https://github.com/Duke-GCB/iMADS-worker.git

Path: predict_service/predict-workflow.cwl

Branch/Commit ID: master

https://github.com/hubmapconsortium/azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: 6694e4b

A CWL wrapper of the TopMed alignment workflow described here: https://github.com/statgen/docker-alignment Tool Author: Hyun Min Kang (hmkang@umich.edu) and Adrian Tan (atks@umich.edu) Wrapper Author: Marko Zecevic (marko.zecevic@sbgenomics.com)

https://github.com/stain/topmed-workflows.git

Path: aligner/sbg-alignment-cwl/topmed-alignment.cwl

Branch/Commit ID: no-id

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-02-variantdiscovery.cwl

Branch/Commit ID: gatk4-fixes

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/workflow.cwl

Branch/Commit ID: 1.0.5

Validation by expert review (external instrument expert or member of the simulation team).

https://github.com/gammasim/workflows.git

Path: workflows/ValidateParameterByExpert.cwl

Branch/Commit ID: main

STARR-seq pipeline - reads: PE

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/pipeline-pe.cwl

Branch/Commit ID: master

Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak) without assembly step by canu, CWLized by Tazro Ohta (@inutano)

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/animal-genome-assembly/animal-genome-assembly.packed.cwl

Branch/Commit ID: main

Packed ID: main

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.wBQSR.multisamples.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/inp_update_wf.cwl

Branch/Commit ID: master