Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph AcceptParameterFailure

validation or review of parameter updates failed. Action required and feedback to be provided.

 https://github.com/gammasim/workflows.git

Path: workflows/AcceptParameterFailure.cwl

Branch/Commit ID: main
workflow graph output.cwl

https://github.com/CERIT-SC/fireprot.git

Path: output.cwl

Branch/Commit ID: master
workflow graph exome alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_exome.cwl

Branch/Commit ID: master
workflow graph step-valuefrom-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom-wf.cwl

Branch/Commit ID: master
workflow graph SetNightSkyBackgroundRate

Derive or calculate night-sky background rate per pixel.

 https://github.com/gammasim/workflows.git

Path: workflows/SetNightSkyBackgroundRate.cwl

Branch/Commit ID: main
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: low-vaf
workflow graph output_reference_workflow_input.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/output_reference_workflow_input.cwl

Branch/Commit ID: main
workflow graph workflow_neuroproof_train.cwl

local

 https://github.com/aplbrain/saber.git

Path: saber/i2g/examples/I2G_Neuroproof/workflow_neuroproof_train.cwl

Branch/Commit ID: master
workflow graph exome alignment and germline variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: downsample_and_recall
workflow graph cmsearch-multimodel-wf.cwl

https://github.com/mr-c/workflow-is-cwl.git

Path: workflows/cmsearch-multimodel-wf.cwl

Branch/Commit ID: fix_sbg_namespace