Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
scatter GATK HaplotypeCaller over intervals
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 026bba9511561246ad65458f0f55c88cead26fbd |
|
|
|
Per-region pindel
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
|
|
|
hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 3e7a3c1cc1ed5164ae0a51a96f20d7c480d1d70b |
|
|
|
blastp_wnode_naming
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 3e7a3c1cc1ed5164ae0a51a96f20d7c480d1d70b |
|
|
|
trnascan_wnode and gpx_qdump combined
|
https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 3e7a3c1cc1ed5164ae0a51a96f20d7c480d1d70b |
|
|
|
Filter Protein Alignments I
|
https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: 3e7a3c1cc1ed5164ae0a51a96f20d7c480d1d70b |
|
|
|
Unaligned to aligned BAM
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: 8dc462a7d9ba1479f764682af99c69d8574cb3dc |
|
|
|
step-valuefrom-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/step-valuefrom-wf.cwl Branch/Commit ID: 4642316a30a95d4f3d135c18f98477886b160094 |
|
|
|
trimming-and-qc-no-upload.cwl
Use fastq file as input and do trimming and quality check. Quality checks are done before trimming and after trimming. |
https://github.com/ddbj/SAPPORO_test_workflow.git
Path: workflow/trimming-and-qc/trimming-and-qc-no-upload/trimming-and-qc-no-upload.cwl Branch/Commit ID: e5a2890ae1267e01de6bbd7c099ffa613fdf7bcc |
|
|
|
scatter-valuefrom-wf3.cwl#main
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf3.cwl Branch/Commit ID: 0b3846fbf866584870a0b1ce902b5574f549dfee Packed ID: main |
