Workflow: rMATS_bam_packed.cwl
Fetched 2024-11-28 04:11:33 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/Xinglab/rmats-turbo/fb6e269a0da3fc923ef437ef32d65bd04bc4d5eb/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| wf_gtf | File | ||
| wf_mel | Integer (Optional) | ||
| wf_mil | Integer (Optional) | ||
| wf_cstat | String (Optional) | ||
| wf_tstat | Integer (Optional) | ||
| wf_bam_g1 | File[] | ||
| wf_bam_g2 | File[] (Optional) | ||
| wf_novelSS | Boolean (Optional) | ||
| wf_nthread | Integer (Optional) | ||
| wf_out_dir | String | ||
| wf_statoff | Boolean (Optional) | ||
| wf_lib_type | String (Optional) | ||
| wf_readLength | Integer | ||
| wf_darts_model | Boolean (Optional) | ||
| wf_anchorLength | Integer (Optional) | ||
| wf_darts_cutoff | String (Optional) | ||
| wf_paired_stats | Boolean (Optional) | ||
| wf_disk_space_gb | Integer (Optional) | ||
| wf_is_single_end | Boolean (Optional) | ||
| wf_allow_clipping | Boolean (Optional) | ||
| wf_machine_mem_gb | Integer (Optional) | ||
| wf_individual_counts | Boolean (Optional) | ||
| wf_variable_read_length | Boolean (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step_post |
bc152916442db343cd66ca321bb466e1
(CommandLineTool)
|
||
| step_prep_g1 |
079ee6b703fe953636839b904d70f8af
(CommandLineTool)
|
||
| step_prep_g2 |
a3c618c29777e2fe48fbaa1dbe4155da
(CommandLineTool)
|
||
| step_exp_prep_g1 |
5b21a0655a63015a2d378e83fa16ede5
(ExpressionTool)
|
||
| step_exp_prep_g2 |
7c1e87a468aaa3e717340be6296321b8
(ExpressionTool)
|
||
| step_exp_read_outcome |
4685af31b3bd4270cf34e90d2de46c3e
(ExpressionTool)
|
||
| step_exp_file_to_loc_g1 |
09337fafc99564c275a6c3c178beb491
(ExpressionTool)
|
||
| step_exp_file_to_loc_g2 |
8b34f8e21a654964552c6f9a467b4525
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| wf_out_tar | File | ||
| wf_read_outcomes | File[] |
Permalink:
https://w3id.org/cwl/view/git/fb6e269a0da3fc923ef437ef32d65bd04bc4d5eb/cwl/rMATS_bam_packed.cwl
