Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	RNA-Seq alignment and transcript/gene abundance workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec
	metrics.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/dnaseq/metrics.cwl Branch/Commit ID: 1046947f8d2923e6563b3aceac9e435554c5bea1
	secret_wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/secret_wf.cwl Branch/Commit ID: 2cec4eebeb3461844b9102b89551b8765c7be348
	tt_kmer_compare_wnode Pairwise comparison	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad
	step-valuefrom-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/step-valuefrom-wf.cwl Branch/Commit ID: 148f11b11d31c098196e649f680797f0b4680114
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee
	scatterfail.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/scatterfail.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06
	ROSE: rank ordering of super-enhancers Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: 799575ce58746813f066a665adeacdda252d8cab
	05-quantification.cwl ChIP-seq - Quantification - samples: treatment	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c
	bacterial_kmer	https://github.com/ncbi/pgap.git Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c