Workflow: Run genomic CMsearch (Rfam rRNA)
Fetched 2023-01-15 00:01:14 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/a34f47d1e37af51e387ecdfa5c3047f106c1146b/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| go | Boolean[] | ||
| seqids | File | ||
| taxon_db | File | ||
| asn_cache | Directory | ||
| model_path | File | ||
| rfam_stockholm | File | ||
| rfam_amendments | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| Run_genomic_CMsearch_Rfam_rRNA_wnode |
cmsearch_wnode.cwl
(CommandLineTool)
|
Run genomic CMsearch (Rfam rRNA), execution | |
| Run_genomic_CMsearch_Rfam_rRNA_submit |
gpx_qsubmit.cwl
(CommandLineTool)
|
Run genomic CMsearch (Rfam rRNA), scatter | |
| Post_process_CMsearch_Rfam_annotations |
annot_merge.cwl
(CommandLineTool)
|
Post-process CMsearch annotations | |
| Run_genomic_CMsearch_Rfam_rRNA_Run_genomic_CMsearch_Rfam_rRNA_dump |
gpx_qdump.cwl
(CommandLineTool)
|
Run genomic CMsearch (Rfam rRNA), gather |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| annots | File |
Permalink:
https://w3id.org/cwl/view/git/a34f47d1e37af51e387ecdfa5c3047f106c1146b/bacterial_ncrna/wf_gcmsearch.cwl
