Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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testDirLayout.cwl
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https://github.com/Epigenomics-Screw/Screw.git
Path: cwl/testDirLayout.cwl Branch/Commit ID: dev |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 708fd97 |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: d71be68 |
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hello_world_checker.cwl
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https://github.com/dockstore/hello_world.git
Path: hello_world_checker.cwl Branch/Commit ID: master |
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Single-cell Multiome ATAC and RNA-Seq Alignment
Single-cell Multiome ATAC and RNA-Seq Alignment Runs Cell Ranger ARC Count to quantifies chromatin accessibility and gene expression from a single-cell Multiome ATAC and RNA-Seq library |
https://github.com/Barski-lab/sc-seq-analysis.git
Path: workflows/sc-multiome-align-wf.cwl Branch/Commit ID: main |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: ada7831 |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: master |
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checker_workflow_wrapping_tool.cwl
This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git
Path: checker_workflow_wrapping_tool.cwl Branch/Commit ID: 1.3.0 |
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Create tagAlign file
This workflow creates tagAlign file |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/create-tagAlign.cwl Branch/Commit ID: master |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: 1.0.9 |
