Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pdx-scatter.cwl

https://github.com/WEHI-ResearchComputing/pdx-genome.git

Path: src/pdx-scatter.cwl

Branch/Commit ID: master
workflow graph metacal-wf.cwl

https://github.com/EiffL/metacal-pipeline.git

Path: tools/metacal-wf.cwl

Branch/Commit ID: master
workflow graph kallisto-demo.cwl

https://github.com/common-workflow-language/workflows.git

Path: workflows/kallisto-demo.cwl

Branch/Commit ID: master
workflow graph step-valuefrom5-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom5-wf.cwl

Branch/Commit ID: master
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: downsample_and_recall
workflow graph exome alignment and tumor-only variant detection

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/tumor_only_exome.cwl

Branch/Commit ID: master
workflow graph gather AML trio outputs

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/aml_trio_cle_gathered.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Apply filters to VCF file

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/filter_vcf.cwl

Branch/Commit ID: master
workflow graph vecscreen.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/vecscreen.cwl

Branch/Commit ID: master
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/david4096/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: develop