Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph lowercase-directory.cwl

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/lowercase-directory.cwl

Branch/Commit ID: master
workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: wes-agha-test/wes_chr21_test-workflow-gcp/wf-alignment.cwl

Branch/Commit ID: master
workflow graph canine_vcfmerger2_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_vcfmerger2_module.cwl

Branch/Commit ID: master
workflow graph Metagenomics workflow

Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (quality trimming) - kraken2 (taxonomy) - bbmap contamination filter - SPAdes (Assembly) - QUAST (Assembly quality report) - BBmap (Read mapping to assembly) - Contig binning (OPTIONAL)

https://git.wageningenur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_metagenomics_assembly.cwl

Branch/Commit ID: master
workflow graph wflow_all_mc.cwl

https://github.com/lukasheinrich/cwltests.git

Path: cwl/wflow_all_mc.cwl

Branch/Commit ID: master
workflow graph qiime2 demux paired sequences

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step1-import-demux-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-02-demux-emp-paired.cwl
workflow graph collate_unique_SSU_headers.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 3168316
workflow graph alignment_bwa_mem.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem.cwl

Branch/Commit ID: master
workflow graph call_cnv.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/call_cnv.cwl

Branch/Commit ID: master
workflow graph canine_deepvariant_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_deepvariant_module.cwl

Branch/Commit ID: master