Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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kmer_compare_wnode
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: b360e89d85d83ba3b863bf86074c0ec7e5c58f48 |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0 |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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format_rrnas_from_seq_entry
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
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vqsr-flow.cwl
run vqsr flow, including vqsr rcal, vqsr apply and plot |
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/vqsr-flow.cwl Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653 |
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Protein Ligand Complex MD Setup tutorial using BioExcel Building Blocks (biobb)
Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI). |
https://github.com/bioexcel/biobb-wf-md-setup-protein-cwl.git
Path: protein_md.cwl Branch/Commit ID: c7a9b4180e1e65f2e6d8fdeb7f8dbbf5c2433dfa |
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merge and annotate svs with population allele freq
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325 |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 9c9e6a6a48eb321804ce772a2c2c12b4f2f32529 |