Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: workflows/emg-qc-single.cwl Branch/Commit ID: master
	calculate_contamination_workflow.cwl GATK4.1.2 Calculate tumor-normal contamination workflow	https://github.com/NCI-GDC/gatk4_mutect2_cwl.git Path: subworkflows/calculate_contamination_workflow.cwl Branch/Commit ID: master
	Running cellranger count and lineage inference	https://github.com/apaul7/cancer-genomics-workflow.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: low-vaf
	wgs alignment and germline variant detection	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: downsample_and_recall
	cram_to_bam workflow	https://github.com/apaul7/cancer-genomics-workflow.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: low-vaf
	integrity.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/dnaseq/integrity.cwl Branch/Commit ID: 1.0
	bam to trimmed fastqs and HISAT alignments	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: downsample_and_recall
	wf_paleocar_models.cwl	https://github.com/idaks/cwl_modeling.git Path: yw_cwl_modeling/yw2cwl_parser/example_sql/paleocar_models/wf_paleocar_models.cwl Branch/Commit ID: master
	rRNA_selection.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/rRNA_selection.cwl Branch/Commit ID: 8515542
	rhapsody_targeted_1.9-beta.cwl#VDJ_ig.cwl	https://github.com/longbow0/cwl.git Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl Branch/Commit ID: master Packed ID: VDJ_ig.cwl

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