Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph SetReadoutPulseShape

Set FADC pulse for high and low-gain channel. Apply transformations required by the simulation model (e.g., normalization, time shift)

 https://github.com/gammasim/workflows.git

Path: workflows/SetReadoutPulseShape.cwl

Branch/Commit ID: main
workflow graph hi-c-processing-pairs-nonorm.cwl

https://github.com/4dn-dcic/pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl

Branch/Commit ID: dev2
workflow graph Raw sequence data to BQSR

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/sequence_to_bqsr.cwl

Branch/Commit ID: master
workflow graph sam_to_fastq_workflow.cwl

sam to fastq workflow

 https://github.com/CRI-iAtlas/iatlas-workflows.git

Path: Sam_to_Fastq/workflow/sam_to_fastq_workflow.cwl

Branch/Commit ID: develop
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 3039744
workflow graph Single-cell RNA-Seq Aggregate

Single-cell RNA-Seq Aggregate Aggregates gene expression data from multiple Single-cell RNA-Seq Alignment experiments.

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-rna-aggregate-wf.cwl

Branch/Commit ID: main
workflow graph marianas_collapsing_workflow.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/marianas/marianas_collapsing_workflow.cwl

Branch/Commit ID: master
workflow graph Metagenomic Binning from Assembly

Workflow for Metagenomics from raw reads to annotated bins.<br> Summary - MetaBAT2 (binning) - CheckM (bin completeness and contamination) - GTDB-Tk (bin taxonomic classification) - BUSCO (bin completeness) **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> The dependencies are either accessible from https://unlock-icat.irods.surfsara.nl (anonymous,anonymous)<br> and/or<br> By using the conda / pip environments as shown in https://git.wur.nl/unlock/docker/-/blob/master/kubernetes/scripts/setup.sh<br>

https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_metagenomics_binning.cwl

Branch/Commit ID: master
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: master
workflow graph SetParameterWorkflowMissing

This is a placeholder for a missing setting workflow.

 https://github.com/gammasim/workflows.git

Path: workflows/SetParameterWorkflowMissing.cwl

Branch/Commit ID: main