Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: main
workflow graph structural-variants-pair.cwl

https://github.com/mskcc/roslin-cwl.git

Path: modules/pair/structural-variants-pair.cwl

Branch/Commit ID: master
workflow graph Transcriptome assembly workflow (single-end version)

https://github.com/EBI-Metagenomics/workflow-is-cwl.git

Path: workflows/TranscriptomeAssembly-wf.single-end.cwl

Branch/Commit ID: master
workflow graph functional analysis prediction with InterProScan

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: c1f8b22
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: d4e5e53
workflow graph WGS QC workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: downsample_and_recall
workflow graph EMG assembly for paired end Illumina

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: 9c57dba
workflow graph basic-text-statistics-pattern-dir.cwl

https://github.com/WhatWorksWhenForWhom/nlppln.git

Path: nlppln/cwl/basic-text-statistics-pattern-dir.cwl

Branch/Commit ID: master
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: c502823
workflow graph pipeline-pe-blacklist-removal.cwl

ATAC-seq pipeline - reads: PE - with blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl

Branch/Commit ID: master