Explore Workflows
View already parsed workflows here or click here to add your own
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SetReadoutPulseShape
Set FADC pulse for high and low-gain channel. Apply transformations required by the simulation model (e.g., normalization, time shift) |
Path: workflows/SetReadoutPulseShape.cwl Branch/Commit ID: main |
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hi-c-processing-pairs-nonorm.cwl
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Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl Branch/Commit ID: dev2 |
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Raw sequence data to BQSR
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Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: master |
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sam_to_fastq_workflow.cwl
sam to fastq workflow |
Path: Sam_to_Fastq/workflow/sam_to_fastq_workflow.cwl Branch/Commit ID: develop |
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rRNA_selection.cwl
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Path: tools/rRNA_selection.cwl Branch/Commit ID: 3039744 |
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Single-cell RNA-Seq Aggregate
Single-cell RNA-Seq Aggregate Aggregates gene expression data from multiple Single-cell RNA-Seq Alignment experiments. |
Path: workflows/sc-rna-aggregate-wf.cwl Branch/Commit ID: main |
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marianas_collapsing_workflow.cwl
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Path: workflows/marianas/marianas_collapsing_workflow.cwl Branch/Commit ID: master |
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Metagenomic Binning from Assembly
Workflow for Metagenomics from raw reads to annotated bins.<br> Summary - MetaBAT2 (binning) - CheckM (bin completeness and contamination) - GTDB-Tk (bin taxonomic classification) - BUSCO (bin completeness) **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> The dependencies are either accessible from https://unlock-icat.irods.surfsara.nl (anonymous,anonymous)<br> and/or<br> By using the conda / pip environments as shown in https://git.wur.nl/unlock/docker/-/blob/master/kubernetes/scripts/setup.sh<br> |
Path: cwl/workflows/workflow_metagenomics_binning.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (single end version)
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Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: master |
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SetParameterWorkflowMissing
This is a placeholder for a missing setting workflow. |
Path: workflows/SetParameterWorkflowMissing.cwl Branch/Commit ID: main |
