Workflow: hi-c-processing-pairs-nore.cwl

Fetched 2019-12-07 02:34:18 GMT
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Inputs

ID Type Title Doc
nres Integer
juicer_res Boolean
max_split_cooler Integer
chromsizes File
chunksize Integer
input_pairs File[] (Optional)
higlass Boolean
nthreads Integer
custom_res String
min_res Integer
mapqfilter_juicer Integer
maxmem String

Steps

ID Runs Label Doc
add-hic-normvector-to-mcool
add-hic-normvector-to-mcool.cwl (CommandLineTool)
cooler
cooler.cwl (CommandLineTool)
merge-pairs
merge-pairs.cwl (CommandLineTool)
cool2mcool
cool2mcool.cwl (CommandLineTool)
extract-mcool-normvector-for-juicebox
extract-mcool-normvector-for-juicebox.cwl (CommandLineTool)
pairs2hic
pairs2hic.cwl (CommandLineTool)

Outputs

ID Type Label Doc
merged_pairs File
hic File
mcool File
cooler_normvector File
Permalink: https://w3id.org/cwl/view/git/c0c0aba5d8f23c49c2a47317b4b6ac994f00ea59/cwl_awsem_v1/hi-c-processing-pairs-nore.cwl