Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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star_samtools_featurecounts_edger.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/star_samtools_featurecounts_edger.cwl Branch/Commit ID: master |
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kmer_cache_store
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: test |
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Low vaf Detect Variants workflow for Megan Cooper
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/low_vaf_detect_variants.cwl Branch/Commit ID: low-vaf |
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01-qc-se.cwl
RNA-seq 01 QC - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl Branch/Commit ID: master |
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steps.cwl
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https://github.com/DimitraPanou/scRNAseq-cwl.git
Path: subworkflows/steps.cwl Branch/Commit ID: 4e9c15b |
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wf_trim_and_map_se.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_trim_and_map_se.cwl Branch/Commit ID: master |
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pcr-bottleneck-coef.cwl
ChIP-seq - map - PCR Bottleneck Coefficients |
https://github.com/duke-gcb/ggr-cwl.git
Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: v1.0.0 |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3039744 |
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hi-c-processing-pairs-nonorm.cwl
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https://github.com/mr-c/4dn-dcic-pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl Branch/Commit ID: dev2 |
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AddBamStatsSomatic_v0_1_0.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/AddBamStatsSomatic_v0_1_0.cwl Branch/Commit ID: master |
