Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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prefactor.cwl
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https://github.com/EOSC-LOFAR/prefactor-cwl.git
Path: prefactor.cwl Branch/Commit ID: c34cad22129b8ebdc4967acf4b635ed9e651e2f4 |
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Apply filters to VCF file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a |
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qiime2 rarefaction visualization
Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-07-alpha-rarefaction.cwl Branch/Commit ID: a6a7d5bd034f8ccf01b809bc9f5ecf87e5c5652c |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c |
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scatter-wf4.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatter-wf4.cwl Branch/Commit ID: 65aedc5e7e1f3ccace7f9022f8a54b3f0d5c9a8c Packed ID: main |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa |
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kf-cram2gvcf-custom.cwl
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https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/kf-cram2gvcf-custom.cwl Branch/Commit ID: c8255e2aab840f671d9f142d74f915c76415ff51 |
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CRAM_md5sum_checker_wrapper.cwl
This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/DataBiosphere/toolbox.git
Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl Branch/Commit ID: 540471878f913d672103e277180e3028c16a3027 |