Workflow: qiime2 rarefaction visualization
Fetched 2023-01-11 08:21:40 GMT
Verified with cwltool version 3.1.20221201130942
Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| table | File | ||
| max_depth | Integer | ||
| rooted_tree | File | ||
| sample_metadata | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| alpha_rarefaction |
../tools/qiime2/diversity-alpha-rarefaction.cwl
(CommandLineTool)
|
qiime2: Generate interactive alpha rarefaction curves by computing rarefactions between a depth range. |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| alpha_rarefaction_file | File |
Permalink:
https://w3id.org/cwl/view/git/a6a7d5bd034f8ccf01b809bc9f5ecf87e5c5652c/subworkflows/qiime2-07-alpha-rarefaction.cwl
