Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
wgs alignment and somatic variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_wgs_nonhuman.cwl Branch/Commit ID: master |
|
|
|
tRNA_selection.cwl
|
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: caea457 |
|
|
|
preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git
Path: preprocess_vcf.cwl Branch/Commit ID: master |
|
|
|
QIIME2 Step 1
QIIME2 Import and Demux Step 1 |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step1-import-demux.cwl Branch/Commit ID: qiime2-workflow Packed ID: main |
|
|
|
Genome conversion and annotation
Workflow for genome annotation from EMBL format |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_sapp_others.cwl Branch/Commit ID: master |
|
|
|
change_formats_and_names.cwl
|
https://github.com/kinow/pipeline-v5.git
Path: workflows/subworkflows/assembly/change_formats_and_names.cwl Branch/Commit ID: eosc-life-gos |
|
|
|
ValidateArrayElementCoordinates
Plot and compare array element coordinates. Validate coordinate transformation from those used in observatory database to simulation systems. |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateArrayElementCoordinates.cwl Branch/Commit ID: main |
|
|
|
joint genotyping for trios or small cohorts
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/joint_genotype.cwl Branch/Commit ID: master |
|
|
|
cmsearch-multimodel.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: master |
|
|
|
module-1-2-chunk
|
https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-1-2.chunk.cwl Branch/Commit ID: dev |
