Explore Workflows
View already parsed workflows here or click here to add your own
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wgs alignment and somatic variant detection
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Path: definitions/pipelines/somatic_wgs_nonhuman.cwl Branch/Commit ID: master |
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tRNA_selection.cwl
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Path: tools/tRNA_selection.cwl Branch/Commit ID: caea457 |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
Path: preprocess_vcf.cwl Branch/Commit ID: master |
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QIIME2 Step 1
QIIME2 Import and Demux Step 1 |
Path: packed/qiime2-step1-import-demux.cwl Branch/Commit ID: qiime2-workflow Packed ID: main |
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Genome conversion and annotation
Workflow for genome annotation from EMBL format |
Path: cwl/workflows/workflow_sapp_others.cwl Branch/Commit ID: master |
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change_formats_and_names.cwl
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Path: workflows/subworkflows/assembly/change_formats_and_names.cwl Branch/Commit ID: eosc-life-gos |
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ValidateArrayElementCoordinates
Plot and compare array element coordinates. Validate coordinate transformation from those used in observatory database to simulation systems. |
Path: workflows/ValidateArrayElementCoordinates.cwl Branch/Commit ID: main |
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joint genotyping for trios or small cohorts
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Path: definitions/subworkflows/joint_genotype.cwl Branch/Commit ID: master |
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cmsearch-multimodel.cwl
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Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: master |
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module-1-2-chunk
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Path: setup/cwl/module-1-2.chunk.cwl Branch/Commit ID: dev |
