Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
Unaligned bam to sorted, markduped bam
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd |
||
02-trim-pe.cwl
RNA-seq 02 trimming - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3 |
||
02-trim-se.cwl
ChIP-seq 02 trimming - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854 |
||
schemadef-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/schemadef-wf.cwl Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4 |
||
pipeline.cwl
|
https://github.com/EBI-Metagenomics/CWL-assembly.git
Path: tools/pipeline.cwl Branch/Commit ID: dd2f03cc8a0ca7bc644968ac0c34d4502d6da093 |
||
kf_jointgenotyping_workflow_optimized.cwl
|
https://github.com/kids-first/kf-jointgenotyping-workflow.git
Path: workflow/kf_jointgenotyping_workflow_optimized.cwl Branch/Commit ID: 9c5671e49e5e47cbe872c7b873c5e479c6aaf973 |
||
grep-and-count.cwl
|
https://github.com/manabuishii/cwl-samples.git
Path: grep-and-count.cwl Branch/Commit ID: bff3770d52404b12d2d0f12b45c4c0edd3213dba |
||
Filter Protein Seeds; Find ProSplign Alignments
|
https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c |
||
gatk4W.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/ambarishK/bio-cwl-tools.git
Path: gatk4W.cwl Branch/Commit ID: 530e671c113e91fe6b9114eda32103bb980450c7 |
||
coverage.cwl
|
https://github.com/EBI-Metagenomics/CWL-assembly.git
Path: tools/stats/coverage.cwl Branch/Commit ID: dd2f03cc8a0ca7bc644968ac0c34d4502d6da093 |