Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
bam to trimmed fastqs and biscuit alignments
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1 |
|
|
|
Tumor-Only Detect Variants workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315 |
|
|
|
exome alignment with qc
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315 |
|
|
|
kmer_build_tree
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942 |
|
|
|
extract_gencoll_ids
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 41d14ec5e2dfa0fac7eebeefda1f26ccea14c9a0 |
|
|
|
adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 22fce2dbdada0c4135b6f0677f78535cf980cb07 |
|
|
|
taxonomy_check_16S
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 146df33e2e44afa2a608ac72c036e6b6b871af93 |
|
|
|
Detect DoCM variants
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 72e0bdc1ec449d86df4534132e9a30ad7e9b8afd |
|
|
|
scatter-valuefrom-wf2.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf2.cwl Branch/Commit ID: a3d565bf8e630101d25d31804cfbceb0a0ba28de |
|
|
|
count-lines6-wf.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines6-wf.cwl Branch/Commit ID: 622134ebc48980676b7e53fe39405c428920c03e |
