Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
preprocessing.cwl
|
https://github.com/MontgomeryLab/tinyRNA.git
Path: tiny/cwl/workflows/preprocessing.cwl Branch/Commit ID: 0921ad0379cfa984798554464f556f1ba0ff562f |
|
|
|
tinyrna_wf.cwl
|
https://github.com/MontgomeryLab/tinyRNA.git
Path: tiny/cwl/workflows/tinyrna_wf.cwl Branch/Commit ID: 0921ad0379cfa984798554464f556f1ba0ff562f |
|
|
|
Perform SV calling of sample vs matched control using Delly, Lumpy, and Manta
|
https://github.com/mr-c/PACT.git
Path: subworkflows/sv_caller.cwl Branch/Commit ID: 45805a5a6dee3d4038d5533c156642f4e5b6a180 |
|
|
|
Identify somatic SVs
|
https://github.com/mr-c/PACT.git
Path: subworkflows/sv_merge_and_filter.cwl Branch/Commit ID: 45805a5a6dee3d4038d5533c156642f4e5b6a180 |
|
|
|
SV Pipeline
|
https://github.com/mr-c/PACT.git
Path: pipelines/sv_pipeline.cwl Branch/Commit ID: 45805a5a6dee3d4038d5533c156642f4e5b6a180 |
|
|
|
Create target and anti-target files for CNA analysis
|
https://github.com/mr-c/PACT.git
Path: subworkflows/cnvkit_prep_regions.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
|
|
|
Calculate reference coverage
|
https://github.com/mr-c/PACT.git
Path: subworkflows/cna_reference_coverage.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
|
|
|
CNA Pipeline
|
https://github.com/mr-c/PACT.git
Path: pipelines/cna_pipeline.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
|
|
|
Initial CNVkit analysis
|
https://github.com/mr-c/PACT.git
Path: subworkflows/cnvkit_initial_analysis.cwl Branch/Commit ID: b533c88cb39e0d03e9fd65fad5e5caa266524d9d |
|
|
|
CNA Pipeline
|
https://github.com/mr-c/PACT.git
Path: pipelines/cna_pipeline.cwl Branch/Commit ID: afa90537a1d7465aba5fda486d004ced7a805030 |
