Workflow: Calculate reference coverage

Fetched 2023-08-23 14:02:05 GMT
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Inputs

ID Type Title Doc
targets File
reference File
anti_targets File
panel_of_normal_bams String[]

Steps

ID Runs Label Doc
target_reference_coverage
../tools/cnvkit_coverage.cwl (CommandLineTool)
CNVkit coverage
combine_reference_coverage
../tools/cnvkit_reference.cwl (CommandLineTool)
CNVkit reference
antitarget_reference_coverage
../tools/cnvkit_coverage.cwl (CommandLineTool)
CNVkit coverage

Outputs

ID Type Label Doc
reference_coverage File
Permalink: https://w3id.org/cwl/view/git/b533c88cb39e0d03e9fd65fad5e5caa266524d9d/subworkflows/cna_reference_coverage.cwl