Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
EMG pipeline v3.0 (paired end version)
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: master |
|
|
|
echo-wc.cwl
Counts words of a message via echo and wc |
https://github.com/NLeSC/scriptcwl.git
Path: tests/data/workflows/echo-wc.cwl Branch/Commit ID: master |
|
|
|
iwdr-passthrough-successive.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/iwdr-passthrough-successive.cwl Branch/Commit ID: main |
|
|
|
qiime2 demux paired sequences
|
https://github.com/bespin-workflows/16s-qiime2.git
Path: subworkflows/qiime2-02-demux-emp-paired.cwl Branch/Commit ID: develop |
|
|
|
tRNA_selection.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: d4e5e53 |
|
|
|
exome alignment and somatic variant detection
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome_mouse.cwl Branch/Commit ID: downsample_and_recall |
|
|
|
Whole Exome Sequencing
Whole Exome Sequence analysis using GATK best practices - Germline SNP & Indel Discovery |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/exomeseq.cwl Branch/Commit ID: qiime2-workflow Packed ID: main |
|
|
|
Single-cell Multiome ATAC and RNA-Seq Aggregate
Single-cell Multiome ATAC and RNA-Seq Aggregate Aggregates data from multiple Single-cell Multiome ATAC and RNA-Seq Alignment experiments |
https://github.com/Barski-lab/sc-seq-analysis.git
Path: workflows/sc-multiome-aggregate-wf.cwl Branch/Commit ID: main |
|
|
|
validate_interleaved_fq.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/validate_interleaved_fq.cwl Branch/Commit ID: develop |
|
|
|
tt_blastn_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: test |
