Explore Workflows

CNV CODEX calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_codex.cwl

Branch/Commit ID: master

https://github.com/cwlviewer-test/Long-covid---aedea650-7a21-11ed-b9d2-e51f21933d80.git

Path: Long-covid.cwl

Branch/Commit ID: read-potential-cases-disc

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines12-wf.cwl

Branch/Commit ID: main

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/inpdir_update_wf.cwl

Branch/Commit ID: main

Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI).

https://github.com/bioexcel/biobb_wf_cwl_tutorial.git

Path: biobb_wf_cwl_tutorial/examples/BioExcel-CWL-MDSetup.cwl

Branch/Commit ID: master

DNAseq pipeline from bam to vcf in distributed mode

https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-bam2vcf-distr.cwl

Branch/Commit ID: master

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-giab-mix/somatic-giab-mix-workflow/main-somatic-giab-mix.cwl

Branch/Commit ID: master

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/align-texts-wf.cwl

Branch/Commit ID: master

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/methylCtools/tools/methylCtools_trim_align_merge_sort_dedup.cwl

Branch/Commit ID: main

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 1b0851e