- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
bam | File | ||
gvcf | File | ||
bam_uri | String | ||
gvcf_uri | String | ||
bam_index | File | ||
aws_config | File | ||
gvcf_index | File | ||
s3_profile | String | ||
s3_endpoint | String | ||
bam_index_uri | String | ||
gvcf_index_uri | String | ||
aws_shared_credentials | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
upload_bam |
../../tools/utils/awscli_upload.cwl
(CommandLineTool)
|
||
upload_gvcf |
../../tools/utils/awscli_upload.cwl
(CommandLineTool)
|
||
upload_bam_index |
../../tools/utils/awscli_upload.cwl
(CommandLineTool)
|
||
upload_gvcf_index |
../../tools/utils/awscli_upload.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
time_metrics_from_upload_bam | File | ||
time_metrics_from_upload_gvcf | File | ||
time_metrics_from_upload_bam_index | File | ||
time_metrics_from_upload_gvcf_index | File |
Permalink:
https://w3id.org/cwl/view/git/13c106834d6c9031de08496faeff521740a0c95f/genomel/cwl/workflows/utils/upload_results.cwl