Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 68e0cc1 |
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predict-workflow.cwl
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https://github.com/johnbradley/iMADS-worker.git
Path: predict_service/predict-workflow.cwl Branch/Commit ID: master |
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Dockstore.cwl
This is a description |
https://github.com/KTest-Organization/github-apps-workflow.git
Path: Dockstore.cwl Branch/Commit ID: master |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: c1f8b22 |
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trim_and_map.cwl
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https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflow_modules/trim_and_map.cwl Branch/Commit ID: master |
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Sounder SIPS L1B PGE
Processes Sounder SIPS L1A products into L1B Products |
https://github.com/unity-sds/unity-sps-workflows.git
Path: sounder_sips/l1b_package.cwl Branch/Commit ID: main Packed ID: main |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0 |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: caea457 |
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chksum_seqval_wf_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.2.1 |
