Explore Workflows

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/scatter-valuefrom-wf6.cwl

Branch/Commit ID: 17695244222b0301b37cb749fe4a8d89622cd1ad

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/psortedDefaultParams.cwl

Branch/Commit ID: master

This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/DataBiosphere/topmed-workflows.git

Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl

Branch/Commit ID: 1.30.0

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut2.cwl

Branch/Commit ID: 445f6b3a214f0c48317b25f7af278ae919ce5403

https://github.com/ncbi/pgap.git

Path: spurious_annot/wf_spurious_annot_pass1.cwl

Branch/Commit ID: 54c5074587af001a44eccb4762a4cb25fa24cb3e

Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file.

https://github.com/ReddyLab/bird-workflow.git

Path: 02_combine_counts/combine_counts.cwl

Branch/Commit ID: main

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: 1.0.0

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut.cwl

Branch/Commit ID: 596aab620489cd2611f4bc1d9a4fc914ddf34514

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-003.cwl

Branch/Commit ID: main

Compare trigger performance between simulations and data.

https://github.com/gammasim/workflows.git

Path: workflows/ValidateTriggerPerformance.cwl

Branch/Commit ID: main