Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exomeseq.cwl#exomeseq-03-organizedirectories.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/exomeseq.cwl Branch/Commit ID: qiime2-workflow Packed ID: exomeseq-03-organizedirectories.cwl |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: test |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 1.0.6 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: low-vaf |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 135976d |
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wf-alignment.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: SGDP-recall-CGC/SGDP-recall-cgc/wf-alignment.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 3168316 |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-fasta.workflow.cwl Branch/Commit ID: master |
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CRAM_md5sum_checker_wrapper.cwl
This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/DataBiosphere/topmed-workflows.git
Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl Branch/Commit ID: 1.24.0 |
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Apply filters to VCF file
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: No_filters_detect_variants |
