Explore Workflows

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: 9b7fde6e34f632ceb1d0e2b1a5799a6f722688c5

https://github.com/gijzelaerr/prefactor-cwl.git

Path: prefactor.cwl

Branch/Commit ID: cc32ae4ab0a4595bca35da1bae0b6158e8be189e

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 88c5eef2f5ee5c1e878b0476f6e1f74cecf9ec29

https://github.com/tobyhodges/siamcat-cwl.git

Path: siamcat.cwl

Branch/Commit ID: 164dd130f3a0b072f9e48f22c4bb7bfc4fe13ba3

https://github.com/gijzelaerr/prefactor-cwl.git

Path: prefactor.cwl

Branch/Commit ID: 70be754b500828879cae5026ce5dd24b5fcf5ec1

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: ca6ca613f0d3728d9589a6ca6293e66dfde87bfb

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/mixed_library_metrics.cwl

Branch/Commit ID: 53fd4d4c05891c7c8b5cd6a5a8179a08c2e585c9

https://github.com/mr-c/scalability-reproducibility-chapter.git

Path: CWL/per_cluster_workflow.cwl

Branch/Commit ID: 3aa8e72bfba7f4cbe455b59298de3158986fab97

https://github.com/gijzelaerr/prefactor-cwl.git

Path: workflow.cwl

Branch/Commit ID: 129c285bf789b1af944ff6b8459c6f6cc7e1f305

https://github.com/gijzelaerr/prefactor-cwl.git

Path: workflow.cwl

Branch/Commit ID: bf410e69ebed5a39b75ffd6283e71257bc1328d1